Revision as of 05:36, 3 December 2013 (view source) Ani (Talk | contribs) ← Older edit		Latest revision as of 22:08, 4 May 2020 (view source) Admin (Talk | contribs)
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	[[File:Ian_new_low_res.jpg|150px|left|alt=Paulsen Lab]]		[[File:Ian_new_low_res.jpg|150px|left|alt=Paulsen Lab]]
−	'''Professor Ian Paulsen'''<br>	+	'''Distinguished Professor Ian Paulsen'''<br>
		+	'''ARC Laureate Fellow'''<br>
	Department of Chemistry and Biomolecular Sciences<br>		Department of Chemistry and Biomolecular Sciences<br>
	Macquarie University<br>		Macquarie University<br>
	Sydney, NSW, Australia, 2109<br>		Sydney, NSW, Australia, 2109<br>
−	Email: ian.paulsen at mq.edu.au<br>
−	Phone: +61 2 9850 8152<br>
−	Fax: +61 2 9850 8313
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	== Experience ==		== Experience ==
−	* 2007 - present: Professor, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia	+	* 2014 - present: Distinguished Professor, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
		+	* 2007 - 2014: Professor, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
	* 2007 - present: Adjunct Associate Investigator, J. Craig Venter Institute, Rockville, MD, USA		* 2007 - present: Adjunct Associate Investigator, J. Craig Venter Institute, Rockville, MD, USA
	* 2003 - 2007: Associate Investigator, The Institute for Genomic Research, Rockville, MD, USA		* 2003 - 2007: Associate Investigator, The Institute for Genomic Research, Rockville, MD, USA
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	== Honors/Awards/Societies ==		== Honors/Awards/Societies ==
		+	* 2014 - present: ARC Laureate Fellow
	* 2007 - present: ISI Highly Cited Author		* 2007 - present: ISI Highly Cited Author
	* 2001 - 2004: Member, Faculty of 1000		* 2001 - 2004: Member, Faculty of 1000
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	= Paulsen lab members =		= Paulsen lab members =
−	[[File:Sasha.jpg|75px|left|alt=Paulsen Lab]]
−	[[Sasha Tetu]] <br>
−
−	Post-Doctoral Fellow<br>
−
−	sasha.tetu@mq.edu.au
−
−
−
−
−	[[File:karl_crop.png|75px|left|alt=Paulsen Lab]]
−	[[Karl Hassan]] <br>
−
−	ARC Post-Doctoral Fellow<br>
−
−	karl.hassan@mq.edu.au
−
−
−
−
−	[[File:martin.jpg|75px|left|alt=Paulsen Lab]]
−	[[Martin Ostrowski]] <br>
−
−	Research Fellow<br>
−
−	martin.ostrowski@mq.edu.au
−
−
−
−
−	[[File:Smazard.png|75px|left|alt=Paulsen Lab]]
−	[[Sophie Mazard]] <br>
−
−	Post-Doctoral Fellow<br>
−
−	sophie.mazard@mq.edu.au
−
−
−
−
−	[[File:Ani.jpg|75px|left|alt=Paulsen Lab]]
−	[[Ani Penesyan]] <br>
−
−	ARC Super Science Post-Doctoral Fellow<br>
−
−	anahit.penesyan@mq.edu.au
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	Bioinformatician <br>		Bioinformatician <br>
−	liam.elbourne@mq.edu.au	+
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	EcoCyc curation<br>		EcoCyc curation<br>
−	amanda.mackie@mq.edu.au
−	[[File:prasanthnewcrop.jpg|75px|left|alt=Paulsen Lab]]
−	[[Prasanth Subramani]] <br>
−
−	PhD Student<br>
−
−	prasanth.subramani@mq.edu.au
−
−
−
−
−	[[File:Dan_crop.png|75px|left|alt=Paulsen Lab]]
−	[[Daniel Farrugia]] <br>
−
−	PhD Student<br>
−
−	daniel.farrugia@students.mq.edu.au
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	PhD Student<br>		PhD Student<br>
−	liping.li1@students.mq.edu.au
−	[[File:KatyPhoto.jpg|75px|left|alt=Paulsen Lab]]
−	[[Katy Breakwell]] <br>
−	PhD Student<br>
−	katy.breakwell@students.mq.edu.au	+
		+
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	PhD Student <br>		PhD Student <br>
−	deepa-ruth.varkey@students.mq.edu.au	+
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	PhD Student <br>		PhD Student <br>
−	sheemal.kumar@students.mq.edu.au	+
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	PhD student <br>		PhD student <br>
−	taotao.huang@students.mq.edu.au	+
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	Masters student <br>		Masters student <br>
−	hua-yu.qin@students.mq.edu.au	+
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	PhD Student <br>		PhD Student <br>
−	bhumika.shah@students.mq.edu.au	+
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	Research Fellow<br>		Research Fellow<br>
−	piklu.roychowdhury@mq.edu.au<br>	+	<br>
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	PhD Student<br>		PhD Student<br>
−	chee.lim@mq.edu.au	+
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	Research Fellow<br>		Research Fellow<br>
−	amy.cain@mq.edu.au<br>	+	<br>
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	Research assistant<br>		Research assistant<br>
−	jan-christoph.rieckmann@mq.edu.au<br>	+	<br>
		+
		+
		+	[[File:Sasha.jpg|75px|left|alt=Paulsen Lab]]
		+	[[Sasha Tetu]] <br>
		+
		+	Post-Doctoral Fellow<br>
		+
		+	[[File:KatyPhoto.jpg|75px|left|alt=Paulsen Lab]]
		+	[[Katy Breakwell]] <br>
		+
		+	PhD Student<br>
		+
		+
		+
		+
		+	[[File:karl_crop.png|75px|left|alt=Paulsen Lab]]
		+	[[Karl Hassan]] <br>
		+
		+	ARC Post-Doctoral Fellow<br>
		+
		+
		+
		+
		+
		+
		+	[[File:martin.jpg|75px|left|alt=Paulsen Lab]]
		+	[[Martin Ostrowski]] <br>
		+
		+	Research Fellow<br>
		+
		+
		+
		+
		+
		+
		+	[[File:Smazard.png|75px|left|alt=Paulsen Lab]]
		+	[[Sophie Mazard]] <br>
		+
		+	Post-Doctoral Fellow<br>
		+
		+
		+
		+
		+
		+
		+	[[File:Ani.jpg|75px|left|alt=Paulsen Lab]]
		+	[[Ani Penesyan]] <br>
		+
		+	ARC Super Science Post-Doctoral Fellow<br>
		+
		+
		+
		+
		+	[[File:prasanthnewcrop.jpg|75px|left|alt=Paulsen Lab]]
		+	[[Prasanth Subramani]] <br>
		+
		+	PhD Student<br>
		+
		+
		+
		+
		+
		+
		+	[[File:Dan_crop.png|75px|left|alt=Paulsen Lab]]
		+	[[Daniel Farrugia]] <br>
		+
		+	PhD Student<br>

---

Latest revision as of 22:08, 4 May 2020

Paulsen lab wiki, Metagenomics, genome sequencing, bioinformatics and functional genomics

Home People Publications Projects

News TransportDB EcoCyc BioCyc

Principal Researcher

Distinguished Professor Ian Paulsen
ARC Laureate Fellow

Department of Chemistry and Biomolecular Sciences
Macquarie University
Sydney, NSW, Australia, 2109

Research Interests

My research interests have focused on understanding microbial physiology and evolution, in particular in utilizing "big picture" or global approaches such as genome sequencing, bioinformatics, microarray analysis, and high throughput cloning, gene knockout, and phenotypic screening. My research interests have been focused in three broad areas:

• Genome diversity, metagenomics and lateral gene transfer
• System biology analysis of membrane transport and metabolism
• Applying Genomics to Medicine

Education

• Ph.D., Medicine, Monash University, Melbourne, Australia & University of Sydney, Sydney, Australia, 1994
• B.Sc.(Hons), Microbiology, Monash University, Melbourne, Australia, 1989

Experience

• 2014 - present: Distinguished Professor, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
• 2007 - 2014: Professor, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia
• 2007 - present: Adjunct Associate Investigator, J. Craig Venter Institute, Rockville, MD, USA
• 2003 - 2007: Associate Investigator, The Institute for Genomic Research, Rockville, MD, USA
• 2000 - 2003: Assistant Investigator, The Institute for Genomic Research, Rockville, MD, USA
• 2000 - 2007: Adjunct Assistant Professor, Johns Hopkins University, Department of Biology, Baltimore, USA
• 1998 - 1999: Assistant Project Scientist, Department of Biology, University of California at San Diego, La Jolla, CA, USA
• 1997 - 1998: C.J. Martin Postdoctoral Fellow, School of Biological Sciences, University of Sydney,Sydney, Australia
• 1995 - 1997: C.J. Martin Postdoctoral Fellow, Department of Biology, University of California at San Diego, La Jolla, CA, USA

Honors/Awards/Societies

• 2014 - present: ARC Laureate Fellow
• 2007 - present: ISI Highly Cited Author
• 2001 - 2004: Member, Faculty of 1000
• 1995 - 1999: C.J. Martin Fellowship; National Health and Medical Research Council, Australia
• 1990 - 1994: Sir Ernest Fields Memorial Scholarship

I am a Senior Editor for the Journal of Molecular Microbiology and Biotechnology (1999-2011). I have previously served as an Editor for the Journal of Microbial Ecology and the Antonie van Leeuwenhoek Journal of General Microbiology. I am a founding editorial board member for two new journals:

• BMC Microbial Informatics and Experimentation
• Mobile Genetic Elements.

I have been a member of the organizing or scientific committees for various conferences including:

• First Gordon Conference on Multidrug Efflux Pumps (2002)
• Genome Sequencing and Analysis Conference (2001, 2002, 2003)
• Second Florence Conference on Biolog Phenotype Microarrays (2010)
• BacPath (2011)
• Pseudomonas (2011)
• Ninth Annual RECOMB Workshop on Comparative Genomic (2011).

Public Outreach

I have participated in a variety of public outreach activities to foster integration of research and education, and to make scientific research more accessible to the general public:

• Science High Achievers Dinner: a lecture given by myself on the basics of microbial genetics, to a number of talented high school high students, organized by Macquarie University, November 2011.
• Sea of Genes: an exhibition on marine genomics at the Birch Aquarium in La Jolla, California which was organized as part of an NSF-funded sequencing led by myself and Brian Palenik at Scripps Institute of Oceanography.
• Interview on the ABC Science Show: Interview with Robyn Williams on the Enterococcus genome
• Boosting BioControl: Very short interview on MicrobeWorld Radio.

Paulsen lab members

Liam Elbourne

Research Fellow

Bioinformatician

Amanda Mackie

Research Assistant

EcoCyc curation

Liping Li

PhD Student

Deepa Varkey

PhD Student

Sheemal Kumar

PhD Student

Qi Liu

PhD student

qliu5321@gmail.com

Taotao Huang

PhD student

Hua Yu Qin

Masters student

Former lab members

Bhumika Shah

PhD Student

Piklu Roy Chowdhury

Research Fellow

Kent Lim

PhD Student

Amy Cain

Research Fellow

Jan Rieckmann

Research assistant

Sasha Tetu

Post-Doctoral Fellow

Katy Breakwell

PhD Student

Karl Hassan

ARC Post-Doctoral Fellow

Martin Ostrowski

Research Fellow

Sophie Mazard

Post-Doctoral Fellow

Ani Penesyan

ARC Super Science Post-Doctoral Fellow

Prasanth Subramani

PhD Student

Daniel Farrugia

PhD Student