Transporter Proteins in
Pseudomonas syringae pv. tomato DC3000
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Tab-delimited format
Genome Size (Mb):
6
Total Transporters:
322
No. of Transporters per Mb genome:
53.67
TRANSPORTER TYPE
TOTAL PROTEINS (PERCENT)
ATP-Dependent
124 (38.5%)
Number
Percent
ABC Family*
119
96%
F-ATPase Family*
1
0.8%
P-ATPase Family*
4
3.2%
Ion Channels
16 (5%)
Number
Percent
Amt Family
1
6.3%
MIP Family
1
6.3%
MIT Family
4
25%
MscL Family
1
6.3%
MscS Family
7
43.8%
VIC Family
2
12.5%
Phosphotransferase System (PTS)
4 (1.2%)
Number
Percent
GPTS Family
2
-
SSPTS Family
2
-
Secondary Transporter
174 (54%)
Number
Percent
AEC Family
1
0.6%
AGCS Family
1
0.6%
APC Family
4
2.3%
ArAE Family
3
1.7%
ArsB Family
1
0.6%
BASS Family
1
0.6%
BCCT Family
1
0.6%
BenE Family
1
0.6%
CaCA Family
2
1.1%
CDF Family
1
0.6%
CitMHS Family
1
0.6%
ClC Family
1
0.6%
CPA1 Family
3
1.7%
CPA2 Family
3
1.7%
CPA3 Family
1
0.6%
DAACS Family
2
1.1%
DMT Family
11
6.3%
FNT Family
1
0.6%
GntP Family
4
2.3%
HAAAP Family
1
0.6%
KUP Family
1
0.6%
LIVCS Family
1
0.6%
LysE Family
1
0.6%
MFS Family
71
40.8%
MOP Family
6
3.4%
MSS Family
2
1.1%
NCS1 Family
2
1.1%
NCS2 Family
3
1.7%
NhaA Family
2
1.1%
NRAMP Family
3
1.7%
NSS Family
1
0.6%
OPT Family
1
0.6%
Oxa1 Family
1
0.6%
PiT Family
2
1.1%
PNaS Family
1
0.6%
RhtB Family
7
4%
RND Family*
12
6.9%
SSS Family
3
1.7%
SulP Family
5
2.9%
Tat Family*
1
0.6%
TDT Family
2
1.1%
TRAP-T Family*
1
0.6%
Trk Family
1
0.6%
TTT Family
1
0.6%
Unclassified
1 (0.3%)
Number
Percent
MgtE Family
1
100%
*
transport proteins functioning as a group are counted once only.
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Last updated
Questions may be sent to:
Ian T. Paulsen
Liam D. H. Elbourne
Credits:
Principle Investigator:
Ian T. Paulsen
Database Administrator and Developer:
Liam D. H. Elbourne
Development Team:
Sasha Tetu
Karl Hassan
Previous Contributors:
Qinghu Ren (previous Lead Developer)
Katherine H. Kang
Kaixi Chen
Seth Goldman
Joy Garg
Jason Tchieu
Joan Chen
Marek K. Sliwinski
Crystal structure adapted from:
Dr. Mark Sansom
Dr. Da-Neng Wang