Transporter Proteins in

Pseudomonas syringae pv. tomato DC3000


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Genome Size (Mb): 6
Total Transporters: 322

No. of Transporters per Mb genome: 53.67


TRANSPORTER TYPE TOTAL PROTEINS (PERCENT)

ATP-Dependent 124 (38.5%)


Number Percent

ABC Family* 119 96%

F-ATPase Family* 1 0.8%

P-ATPase Family* 4 3.2%

Ion Channels 16 (5%)


Number Percent

Amt Family 1 6.3%

MIP Family 1 6.3%

MIT Family 4 25%

MscL Family 1 6.3%

MscS Family 7 43.8%

VIC Family 2 12.5%

Phosphotransferase System (PTS) 4 (1.2%)


Number Percent

GPTS Family 2 -

SSPTS Family 2 -

Secondary Transporter 174 (54%)


Number Percent

AEC Family 1 0.6%

AGCS Family 1 0.6%

APC Family 4 2.3%

ArAE Family 3 1.7%

ArsB Family 1 0.6%

BASS Family 1 0.6%

BCCT Family 1 0.6%

BenE Family 1 0.6%

CaCA Family 2 1.1%

CDF Family 1 0.6%

CitMHS Family 1 0.6%

ClC Family 1 0.6%

CPA1 Family 3 1.7%

CPA2 Family 3 1.7%

CPA3 Family 1 0.6%

DAACS Family 2 1.1%

DMT Family 11 6.3%

FNT Family 1 0.6%

GntP Family 4 2.3%

HAAAP Family 1 0.6%

KUP Family 1 0.6%

LIVCS Family 1 0.6%

LysE Family 1 0.6%

MFS Family 71 40.8%

MOP Family 6 3.4%

MSS Family 2 1.1%

NCS1 Family 2 1.1%

NCS2 Family 3 1.7%

NhaA Family 2 1.1%

NRAMP Family 3 1.7%

NSS Family 1 0.6%

OPT Family 1 0.6%

Oxa1 Family 1 0.6%

PiT Family 2 1.1%

PNaS Family 1 0.6%

RhtB Family 7 4%

RND Family* 12 6.9%

SSS Family 3 1.7%

SulP Family 5 2.9%

Tat Family* 1 0.6%

TDT Family 2 1.1%

TRAP-T Family* 1 0.6%

Trk Family 1 0.6%

TTT Family 1 0.6%

Unclassified 1 (0.3%)


Number Percent

MgtE Family 1 100%

*transport proteins functioning as a group are counted once only.
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Questions may be sent to: Ian T. Paulsen Liam D. H. Elbourne
Credits:
Principle Investigator: Ian T. Paulsen
Database Administrator and Developer: Liam D. H. Elbourne
Development Team: Sasha Tetu Karl Hassan
Previous Contributors: Qinghu Ren (previous Lead Developer) Katherine H. Kang Kaixi Chen Seth Goldman
Joy Garg Jason Tchieu Joan Chen Marek K. Sliwinski
Crystal structure adapted from: Dr. Mark Sansom Dr. Da-Neng Wang