Transporter Protein
BB4430


    Transport Function
Transporter Name: BB4430
Transporter Type: Secondary Transporter
Transporter Family: RND (TC#: 2.A.6)
The Resistance-Nodulation-Cell Division (RND) Superfamily
Transporter Subfamily: 
Substrate/Function: acriflavin efflux
TC#: 
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    Genome Locus
PID:   33603404     Blast
Source:   Bordetella bronchiseptica RB50 NCTC-13252
Chromosome:   -
Location:   4716896..4720003
Gene:   -
Length:  1035
Strand:  -
Code:   -
COG:   -
Product:  AcrB/AcrD/AcrF family protein
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    Transmembrane Segment
TMSs: 
TMHMM Server 
Total:     10
TMS 1:  7-29
TMS 2:  336-353
TMS 3:  360-382
TMS 4:  434-456
TMS 5:  463-485
TMS 6:  524-546
TMS 7:  858-880
TMS 8:  900-922
TMS 9:  959-981
TMS 10:  991-1013
Topology:   >BB4430
MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTISVSASLPGASPETMASSVATPLERS
LGSIAGVTEMTSRSSQGSTRITLQFDLSRDVDGAARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIM
TLAMTSATLGQGKLYDLASTIVAQKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSS
ANANRPKGMVENDQYHWQVMASDQLDRAEQYRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKA
ILMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVAQDRTPSIRASLHEAELTLVIAVGLVVLVVL
LFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFVVDDAIVVLENIMRHIERGATP
MRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGRLFREFAVTLSASILVSLVVSLTLTPMMCARLL
RAEPAAPRPPGRIGRLWTRLYGGMQGGYERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDT
GQLLGFFRGDQGTSFQATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTV
INRLRGRLQNEPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEITDVDAD
VEDKGRQIDLVIDRDAATRLGVSMATISAVLNNSFSQRQVSVIYGPLNQYHVVMGVDPRFAQDIESLKQV
HVIAADGQRVPLAAFAQLKVANAPLSVSHQGLFVADTISFSLSPGVSLDQATGAIDAAVARIGLPSDQIQ
AGFQGTAAELQKTLARQPWLILAALVTMYIVLGILYESLVHPLTILSTLPSAGIGALLALMLLGHEFTLI
ALIGVFLLIGIVKKNAIMMVDFALEAERRDGLDARAAILRACLTRFRPIMMTTMAAIFGALPLMLASGPG
VEMRRPLGITIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP
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    Sequence
Protein Sequence: >BB4430 33603404 AcrB/AcrD/AcrF family protein [Bordetella bronchiseptica RB50 NCTC-13252]
MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTISVSASLPGASPETMASSVATPLERS
LGSIAGVTEMTSRSSQGSTRITLQFDLSRDVDGAARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIM
TLAMTSATLGQGKLYDLASTIVAQKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSS
ANANRPKGMVENDQYHWQVMASDQLDRAEQYRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKA
ILMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVAQDRTPSIRASLHEAELTLVIAVGLVVLVVL
LFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFVVDDAIVVLENIMRHIERGATP
MRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGRLFREFAVTLSASILVSLVVSLTLTPMMCARLL
RAEPAAPRPPGRIGRLWTRLYGGMQGGYERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDT
GQLLGFFRGDQGTSFQATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTV
INRLRGRLQNEPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEITDVDAD
VEDKGRQIDLVIDRDAATRLGVSMATISAVLNNSFSQRQVSVIYGPLNQYHVVMGVDPRFAQDIESLKQV
HVIAADGQRVPLAAFAQLKVANAPLSVSHQGLFVADTISFSLSPGVSLDQATGAIDAAVARIGLPSDQIQ
AGFQGTAAELQKTLARQPWLILAALVTMYIVLGILYESLVHPLTILSTLPSAGIGALLALMLLGHEFTLI
ALIGVFLLIGIVKKNAIMMVDFALEAERRDGLDARAAILRACLTRFRPIMMTTMAAIFGALPLMLASGPG
VEMRRPLGITIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP
DNA Sequence: >BB4430 33603404 AcrB/AcrD/AcrF family protein [Bordetella bronchiseptica RB50 NCTC-13252]
ATGATTCTGTCGGCGCCGTTCATCGTCCGTCCGGTGGCCACCACGCTGCTGTGCCTGGGCGTGGTGCTGG
CCGGGCTGCTGGCGTACCGCCTGTTGCCGGTCGCGCCCCTGCCGCAAGTGGACATCCCGACCATTTCGGT
ATCGGCCAGCCTGCCCGGCGCCAGCCCCGAGACCATGGCCTCCAGCGTGGCCACGCCGCTGGAGCGCTCG
CTGGGCAGCATCGCCGGCGTTACCGAGATGACCTCGCGCAGCTCGCAGGGGTCGACCCGCATCACCCTGC
AGTTCGATCTCAGCCGCGACGTCGATGGCGCGGCGCGCGACGTGCAGGCCGCCATCAACGCGGCGCGCTC
GCTGCTGCCCACCAGCCTGCGCAGCAACCCCACGTACCACAAGGCCAATCCGTCGGCGGCGCCCATCATG
ACGCTGGCCATGACCTCGGCCACGCTGGGCCAGGGCAAGCTGTACGACCTGGCCTCGACCATCGTCGCGC
AGAAGCTGGCCCAGGTGAACGGCGTGGGCGAGGTGACGGTGGGCGGCAGCTCGCTGCCGGCGGTGCGCGT
CAACCTCATCCCGGGCGCGCTGGCCAATCGCGGCGTGTCGCTCGACGAGGTGCGCCAGGCGCTGTCCAGC
GCCAACGCCAACCGCCCCAAGGGCATGGTGGAGAACGACCAGTACCACTGGCAGGTCATGGCCAGCGACC
AGCTCGACCGCGCCGAGCAGTACCGGCCGCTGATCGTAGCCTGGCGCGACGGCGCGGCCGTGCGGCTGTC
CGACGTGGCCAGCGTGGAAGACTCGGTCGAGGACCTGTACCAGACCGGCTTCTACAACGACCGCAAGGCC
ATCCTGATGATCGTGCGGCGCCAGGCCGACGCCAACATCATCGAGACCGTCGACGCGGTGCGCGCCCAGC
TGCCCCAGCTGGCGGCCCTGCTGCCGGGCGACGTGGACCTGACCGTGGCGCAGGATCGCACGCCCAGCAT
CCGCGCCTCGCTGCACGAGGCCGAGCTGACGCTGGTCATCGCGGTGGGCCTGGTGGTGCTGGTGGTGCTG
CTGTTCCTGCGCCGGCTGCGCGCCGCCTTCATTCCCAGCGTGGCGGTGCCGGTATCGCTGATCGGCACCT
TCTGTGTGATGTACTTGTGCGGCTACACGCTGAACACCATTTCGCTCATGGCCCTGATCGTGGCCACCGG
GTTCGTGGTCGACGACGCCATCGTGGTGCTGGAAAACATCATGCGGCATATCGAGCGCGGCGCCACGCCC
ATGCGCGCGGCGCTGCGCGGCTCGCGCGAGGTGGGCTTCACCGTGCTGTCGATGAGCCTGTCGCTGGTGG
CGGTGTTCATCCCCATCCTGCTGATGGGCGGCGTGGCGGGGCGGCTGTTTCGCGAGTTCGCCGTGACCCT
GTCGGCCTCCATCCTGGTTTCGCTGGTGGTGTCGCTGACGCTCACGCCCATGATGTGCGCGCGGCTGCTG
CGCGCCGAGCCGGCCGCGCCGCGCCCGCCGGGGCGGATCGGGCGCCTCTGGACGCGCCTGTACGGCGGCA
TGCAGGGCGGCTACGAGCGCAGCCTGGGCTGGGCGCTGGCGCATGCGCGGCTGATGATGCTGATCCTGGC
CGCCACCATCGGGCTCAACGTGTATCTGTACATGGTGGTGCCCAAGGGCTTTTTCCCGCAGCAGGACACC
GGCCAGCTGCTGGGCTTTTTCCGCGGCGACCAGGGCACCTCGTTCCAGGCCACGGTGCCCAAGCTGGAGT
ACTTCCGCAAGGTCATCCTGGCCGACCCGGCGGTGCAGAGCGTGACGGCCTACGCGGGCGGTCGCGGCGG
CAGCAATTCCAGCTTCATGCAGATCCAGCTCAAGCCGCTCGAAGAGCGCGGCGTGAGCGCCGACACGGTC
ATCAACCGGTTGCGCGGGCGCCTGCAGAACGAACCCGGCGCGCGCATGTTCCTGGTGGCGCAGCAGGATA
TCCATATCGGCGGGCGCCAGAGTTCCGGCTCGTACGACTACACGCTGATGTCCGGCGACCTGGCGCTGCT
GCGCGAATGGATGCCCAGGGTGCAGCGGGCCATGGCGGCATTGCCCGAAATCACCGATGTGGACGCCGAT
GTCGAGGACAAGGGGCGCCAGATCGATCTGGTGATCGACCGCGATGCCGCCACGCGGCTGGGCGTGAGCA
TGGCCACCATTTCGGCGGTGCTGAACAATTCATTCAGCCAGCGCCAGGTTTCGGTCATCTACGGGCCGCT
GAACCAGTACCACGTGGTCATGGGCGTGGATCCGCGCTTCGCGCAGGATATCGAGTCGCTCAAGCAGGTG
CATGTGATCGCGGCCGACGGCCAGCGCGTGCCGCTGGCGGCTTTCGCGCAGCTGAAGGTGGCCAACGCGC
CGCTGTCGGTCAGCCACCAGGGGCTGTTCGTGGCCGATACGATTTCGTTCAGCCTGTCGCCCGGCGTATC
GCTGGACCAGGCCACCGGCGCCATCGACGCGGCCGTGGCCCGGATCGGCCTGCCGTCGGACCAGATCCAG
GCGGGTTTCCAGGGCACGGCGGCCGAGCTGCAGAAGACGCTGGCGCGCCAGCCATGGCTGATCCTGGCGG
CGCTGGTGACGATGTATATCGTGCTGGGCATTCTGTACGAAAGCCTGGTGCACCCGCTGACCATCCTGTC
CACGCTGCCGTCGGCCGGCATCGGCGCGCTGCTGGCCCTGATGCTGCTCGGCCACGAGTTCACCCTGATC
GCGCTGATCGGCGTGTTCCTGCTGATCGGCATCGTCAAGAAGAACGCCATCATGATGGTCGACTTCGCGC
TGGAGGCCGAGCGGCGCGATGGCCTGGACGCGCGCGCGGCGATCCTGCGCGCCTGCCTGACGCGTTTCCG
TCCCATCATGATGACGACCATGGCGGCCATTTTCGGCGCCTTGCCGCTGATGCTGGCCAGCGGGCCTGGC
GTGGAGATGCGCCGTCCGCTGGGCATCACCATCGTGGGCGGCCTGGTGCTCAGCCAGATCCTTACCCTGT
ACACCACGCCGGTGGTGTACCTGTACCTGGACCGCTTCCGCCTGTGGGCCGCGCGCCGGCGCGCGGCGCG
GTCCGCTCCTGATCCCACCCGCCCATGA
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    Publications
Publications on this gene:
1.  Mol Microbiol 2004 May ; 4(52):1201-14.
Regulation of type III secretion in Bordetella.

Mattoo S ,Yuk MH ,Huang LL ,Miller JF ,

Department of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine at UCLA, 10833 Le Conte Ave., Los Angeles, CA 90095-1747, USA.

The BvgAS virulence control system regulates the expression of type III secretion genes in Bordetella subspecies that infect humans and other mammals. We have identified five open reading frames, btrS, btrU, btrX, btrW and btrV, that are activated by BvgAS and encode regulatory factors that control type III secretion at the levels of transcription, protein expression and secretion. The btrS gene product bears sequence similarity to ECF (extracytoplasmic function) sigma factors and is required for transcription of the bsc locus. btrU, btrW and btrV encode proteins predicted to contain PP2C-like Ser phosphatase, HPK (His protein kinase)-like Ser kinase and STAS anti-sigma factor antagonist domains, respectively, which are characteristic of Gram-positive partner switching proteins in Bacillus subtilis. BtrU and BtrW are required for secretion of proteins that are exported by the bsc type III secretion system, whereas BtrV is specifically required for protein synthesis and/or stability. Bordetella species have thus evolved a unique cascade to differentially regulate type III secretion that combines a canonical phosphorelay system with an ECF sigma factor and a set of proteins with domain signatures that define partner switchers, which were traditionally thought to function only in Gram-positive bacteria. The presence of multiple layers and mechanisms of regulation most likely reflects the need to integrate multiple signals in controlling type III secretion. The bsc and btr loci are nearly identical between broad-host-range and human-specific Bordetella. Comparative analysis of Bordetella subspecies revealed that, whereas bsc and btr loci were transcribed in all subspecies, only broad-host-range strains expressed a functional type III secretion system in vitro. The block in type III secretion is post-transcriptional in human-adapted strains, and signal recognition appears to be a point of divergence between subspecies.

Publication Type: Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.;

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    External Links

   TIGR CMRTHE SEEDThe SEED  
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    NBCI Gene Page
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