Transporter Protein
BB4020


    Transport Function
Transporter Name: BB4020
Transporter Type: Secondary Transporter
Transporter Family: DMT (TC#: 2.A.7)
The Drug/Metabolite Transporter (DMT) Superfamily
Transporter Subfamily: 
Substrate/Function: drug/metabolite?
TC#: 
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    Genome Locus
PID:   33602994     Blast
Source:   Bordetella bronchiseptica RB50 NCTC-13252
Chromosome:   -
Location:   4271129..4272046
Gene:   -
Length:  305
Strand:  -
Code:   -
COG:   -
Product:  putative membrane protein
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    Transmembrane Segment
TMSs: 
TMHMM Server 
Total:     10
TMS 1:  20-39
TMS 2:  49-68
TMS 3:  81-100
TMS 4:  105-127
TMS 5:  132-151
TMS 6:  166-184
TMS 7:  196-215
TMS 8:  225-244
TMS 9:  257-274
TMS 10:  279-296
Topology:   >BB4020
MRSIPSPPGAAQPQPRHMAFPLLATTIWSVNMVVTKMAADVIAPASIGFYRWVLAGLLLAPFALPGVLRQ
WPQIRPNLGRLAVLGGLGMALYQGLMYVAAGTTTATNMGIITAMVPLLTVVVGSLVLRERPALTAILGAV
VSLAGLGILLGEGNPLRLLALGGSRGDALMGLAALAYALYGVLLRKWPMSVGPWQSLFVQVLFGIVFQLP
AFLLTPASPLNAQNIPLVLYAGIFPSLFAPFLWMQGVRYLGPNRASIFLNLMPVVTVAIAAAFLGETPHL
YHIAGGLMALAGVSLAQWRPARRRA
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    Sequence
Protein Sequence: >BB4020 33602994 putative membrane protein [Bordetella bronchiseptica RB50 NCTC-13252]
MRSIPSPPGAAQPQPRHMAFPLLATTIWSVNMVVTKMAADVIAPASIGFYRWVLAGLLLAPFALPGVLRQ
WPQIRPNLGRLAVLGGLGMALYQGLMYVAAGTTTATNMGIITAMVPLLTVVVGSLVLRERPALTAILGAV
VSLAGLGILLGEGNPLRLLALGGSRGDALMGLAALAYALYGVLLRKWPMSVGPWQSLFVQVLFGIVFQLP
AFLLTPASPLNAQNIPLVLYAGIFPSLFAPFLWMQGVRYLGPNRASIFLNLMPVVTVAIAAAFLGETPHL
YHIAGGLMALAGVSLAQWRPARRRA
DNA Sequence: >BB4020 33602994 putative membrane protein [Bordetella bronchiseptica RB50 NCTC-13252]
ATGCGCAGCATCCCTTCGCCGCCCGGCGCCGCCCAGCCGCAGCCGCGCCACATGGCGTTTCCCCTGCTGG
CGACGACGATCTGGTCGGTCAACATGGTGGTAACCAAAATGGCGGCCGACGTGATCGCGCCAGCCTCCAT
CGGTTTCTACCGCTGGGTGCTGGCCGGCCTGCTGCTGGCGCCGTTCGCCCTGCCCGGAGTGCTGCGGCAA
TGGCCGCAGATCCGGCCCAACCTCGGCAGGCTGGCGGTCCTGGGCGGCCTCGGCATGGCCTTGTACCAGG
GCCTGATGTACGTGGCGGCGGGCACGACCACCGCCACCAACATGGGCATCATCACCGCCATGGTTCCCTT
GCTGACGGTCGTGGTCGGCTCGCTGGTGCTGCGCGAACGGCCGGCGCTCACCGCCATCCTCGGCGCCGTG
GTCTCGCTCGCGGGGCTGGGCATCCTGCTGGGCGAGGGCAATCCGCTGCGCCTGCTGGCGCTGGGCGGCA
GCCGCGGCGACGCGCTGATGGGGCTGGCGGCGCTGGCGTATGCGCTCTACGGCGTGCTGTTGCGCAAGTG
GCCGATGTCGGTCGGGCCGTGGCAGTCGCTGTTCGTGCAGGTGCTGTTCGGCATTGTGTTCCAGTTGCCG
GCATTCCTGCTGACGCCGGCCTCGCCCCTGAATGCGCAGAACATCCCGCTGGTCCTGTATGCAGGCATTT
TCCCGTCGCTGTTCGCGCCATTTCTGTGGATGCAGGGGGTGCGCTACCTGGGACCCAACCGGGCCAGCAT
CTTCCTCAACCTGATGCCGGTCGTCACGGTCGCCATCGCCGCCGCCTTCCTGGGCGAAACGCCGCACCTG
TATCACATTGCCGGCGGCCTGATGGCGCTGGCCGGCGTCAGCCTGGCCCAGTGGCGCCCCGCGCGGCGCC
GCGCCTGA
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    Publications
Publications on this gene:
1.  Mol Microbiol 2004 May ; 4(52):1201-14.
Regulation of type III secretion in Bordetella.

Mattoo S ,Yuk MH ,Huang LL ,Miller JF ,

Department of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine at UCLA, 10833 Le Conte Ave., Los Angeles, CA 90095-1747, USA.

The BvgAS virulence control system regulates the expression of type III secretion genes in Bordetella subspecies that infect humans and other mammals. We have identified five open reading frames, btrS, btrU, btrX, btrW and btrV, that are activated by BvgAS and encode regulatory factors that control type III secretion at the levels of transcription, protein expression and secretion. The btrS gene product bears sequence similarity to ECF (extracytoplasmic function) sigma factors and is required for transcription of the bsc locus. btrU, btrW and btrV encode proteins predicted to contain PP2C-like Ser phosphatase, HPK (His protein kinase)-like Ser kinase and STAS anti-sigma factor antagonist domains, respectively, which are characteristic of Gram-positive partner switching proteins in Bacillus subtilis. BtrU and BtrW are required for secretion of proteins that are exported by the bsc type III secretion system, whereas BtrV is specifically required for protein synthesis and/or stability. Bordetella species have thus evolved a unique cascade to differentially regulate type III secretion that combines a canonical phosphorelay system with an ECF sigma factor and a set of proteins with domain signatures that define partner switchers, which were traditionally thought to function only in Gram-positive bacteria. The presence of multiple layers and mechanisms of regulation most likely reflects the need to integrate multiple signals in controlling type III secretion. The bsc and btr loci are nearly identical between broad-host-range and human-specific Bordetella. Comparative analysis of Bordetella subspecies revealed that, whereas bsc and btr loci were transcribed in all subspecies, only broad-host-range strains expressed a functional type III secretion system in vitro. The block in type III secretion is post-transcriptional in human-adapted strains, and signal recognition appears to be a point of divergence between subspecies.

Publication Type: Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.;

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    External Links

   TIGR CMRTHE SEEDThe SEED  
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    NBCI Gene Page
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