Transporter Protein
BB3874


    Transport Function
Transporter Name: BB3874
Transporter Type: Secondary Transporter
Transporter Family: BCCT (TC#: 2.A.15)
The Betaine/Carnitine/Choline Transporter (BCCT) Family
Transporter Subfamily: 
Substrate/Function: choline
TC#: 
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    Genome Locus
PID:   33602849     Blast
Source:   Bordetella bronchiseptica RB50 NCTC-13252
Chromosome:   -
Location:   4111596..4113827
Gene:   betT
Length:  743
Strand:  -
Code:   -
COG:   -
Product:  high-affinity choline transport protein
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    Transmembrane Segment
TMSs: 
TMHMM Server 
Total:     12
TMS 1:  73-95
TMS 2:  110-132
TMS 3:  153-175
TMS 4:  204-226
TMS 5:  254-276
TMS 6:  291-313
TMS 7:  325-347
TMS 8:  376-398
TMS 9:  411-433
TMS 10:  461-483
TMS 11:  513-535
TMS 12:  539-561
Topology:   >BB3874
MSITPPDDEGAEPGPSSQAPHAQAAALRRPIERSRFGGSQRRPERQDGDDAPVSRSDLSKGPEEVLERRT
ASINWRVLLVSSAVIVAFSVWAILVPGDARMRMKTAVDWIAANLGWYYVLTMTLVIGFVLWVAFSKEGDV
RLGPDHSRPQYRLSTWVAMLFAAGVGIDMLFFSVTGPVVQYLHPPSGEGGTAAAMQDAVVWTMFHYGVAG
WSMYALLGMAMGYFAYRWGMPLSIRAALYPLLGKRVRGPLGDGISIIALVGTVFGVATSMGIGVVLLNVG
FSLIFGLEQGLSLQIALVVGAVILTIGATTSGVDRGIRWISELNLWSAVAMMVYILLTGQTAFLLNALSE
NIGRFLVTFPARTLQTFAYEPGGPEWMGGWTLFFWAFWLAWGPFVGVFLARISRGRTLREFVIAAITAPV
LCDFIIVSLFGNSALYHVLQGDTAFAALAVESPERGWYALLAMFPGAMFLIGLATLSGLLFYLTSANSGA
MVMSNFSASIPDPSHDGPKWLRIFWAVLTAVLTVAMLLAGGVTTMEYATLIFALPVTIIAYTVMASFYKV
LRMERAEREGQVLRRPSMAPMGGHLPERSWKQRLEQLHAFASLRQATQFLDRTVRPALGDVAAEFRNQGY
EVASESLASERGIEEPLLRVSMDGFRAFQYHVAVVEAPVPMFSGRMSRETDVYYRLEVFTQTGSGGYDLM
GLTRQQVIDDVLERFEAHLAFLTFSTNTDTASVLTPPAPARNP
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    Sequence
Protein Sequence: >BB3874 33602849 high-affinity choline transport protein [Bordetella bronchiseptica RB50 NCTC-13252]
MSITPPDDEGAEPGPSSQAPHAQAAALRRPIERSRFGGSQRRPERQDGDDAPVSRSDLSKGPEEVLERRT
ASINWRVLLVSSAVIVAFSVWAILVPGDARMRMKTAVDWIAANLGWYYVLTMTLVIGFVLWVAFSKEGDV
RLGPDHSRPQYRLSTWVAMLFAAGVGIDMLFFSVTGPVVQYLHPPSGEGGTAAAMQDAVVWTMFHYGVAG
WSMYALLGMAMGYFAYRWGMPLSIRAALYPLLGKRVRGPLGDGISIIALVGTVFGVATSMGIGVVLLNVG
FSLIFGLEQGLSLQIALVVGAVILTIGATTSGVDRGIRWISELNLWSAVAMMVYILLTGQTAFLLNALSE
NIGRFLVTFPARTLQTFAYEPGGPEWMGGWTLFFWAFWLAWGPFVGVFLARISRGRTLREFVIAAITAPV
LCDFIIVSLFGNSALYHVLQGDTAFAALAVESPERGWYALLAMFPGAMFLIGLATLSGLLFYLTSANSGA
MVMSNFSASIPDPSHDGPKWLRIFWAVLTAVLTVAMLLAGGVTTMEYATLIFALPVTIIAYTVMASFYKV
LRMERAEREGQVLRRPSMAPMGGHLPERSWKQRLEQLHAFASLRQATQFLDRTVRPALGDVAAEFRNQGY
EVASESLASERGIEEPLLRVSMDGFRAFQYHVAVVEAPVPMFSGRMSRETDVYYRLEVFTQTGSGGYDLM
GLTRQQVIDDVLERFEAHLAFLTFSTNTDTASVLTPPAPARNP
DNA Sequence: >BB3874 33602849 high-affinity choline transport protein [Bordetella bronchiseptica RB50 NCTC-13252]
ATGTCGATCACACCACCCGACGACGAGGGGGCCGAGCCCGGGCCGTCCAGCCAGGCGCCGCACGCGCAGG
CCGCGGCGTTGCGCCGGCCGATCGAACGCAGCCGGTTCGGCGGCTCGCAGCGCCGCCCTGAACGCCAGGA
CGGCGACGATGCGCCGGTGTCGCGCAGCGACCTCAGCAAGGGGCCCGAGGAGGTGCTCGAGCGCCGCACG
GCCAGCATAAATTGGCGTGTGCTGCTGGTCTCGTCGGCCGTGATCGTCGCGTTCTCGGTATGGGCGATCC
TGGTGCCCGGCGATGCGCGCATGAGGATGAAGACGGCCGTCGACTGGATTGCGGCCAATCTGGGCTGGTA
CTACGTGCTGACCATGACGCTGGTGATCGGTTTCGTGCTGTGGGTCGCGTTTTCCAAGGAGGGAGACGTG
CGCCTCGGCCCCGATCATTCGCGGCCGCAATACCGGCTGTCGACCTGGGTCGCGATGCTGTTTGCCGCCG
GCGTCGGGATCGACATGCTTTTCTTCTCGGTCACCGGGCCGGTCGTGCAGTACCTGCATCCGCCGTCCGG
CGAGGGCGGCACGGCGGCAGCCATGCAGGACGCGGTCGTCTGGACGATGTTCCACTACGGGGTGGCGGGC
TGGTCCATGTATGCCTTGCTGGGCATGGCGATGGGATACTTCGCCTACCGCTGGGGCATGCCCCTGTCCA
TCCGCGCGGCGCTCTATCCGCTGTTGGGCAAGCGCGTGCGCGGCCCCCTGGGCGACGGCATCAGCATCAT
CGCGCTGGTCGGCACGGTGTTCGGCGTGGCGACCTCGATGGGCATCGGCGTGGTGCTGCTCAACGTCGGT
TTCTCGCTGATTTTCGGGCTGGAGCAAGGCCTGTCGCTGCAGATCGCCCTGGTCGTGGGCGCCGTGATCC
TGACCATCGGGGCCACGACGTCCGGGGTCGACCGCGGCATCCGCTGGATTTCCGAGCTGAACCTCTGGAG
CGCGGTGGCGATGATGGTCTACATCCTGCTCACCGGGCAAACGGCATTCCTCCTGAATGCGCTATCGGAG
AACATCGGCCGGTTTCTCGTGACGTTCCCCGCGCGCACCTTGCAGACGTTCGCCTACGAGCCCGGCGGGC
CGGAGTGGATGGGCGGTTGGACGCTGTTCTTCTGGGCGTTCTGGCTGGCGTGGGGGCCGTTCGTCGGCGT
CTTTCTCGCGCGCATTTCGCGCGGGCGGACGCTGCGCGAATTCGTGATCGCCGCGATCACCGCACCGGTG
CTGTGCGACTTCATCATCGTTTCGCTGTTCGGCAACTCGGCCCTTTATCACGTGCTGCAGGGCGACACCG
CGTTCGCCGCGCTCGCGGTCGAAAGCCCCGAGCGTGGTTGGTACGCGCTGCTGGCGATGTTTCCGGGAGC
CATGTTCCTGATAGGCCTGGCCACGCTGTCGGGGCTGTTGTTCTACCTGACCAGCGCGAATTCGGGCGCG
ATGGTGATGTCGAACTTTTCGGCGTCGATCCCCGACCCCTCGCACGACGGGCCGAAGTGGCTGCGCATCT
TCTGGGCCGTGCTGACGGCAGTGCTGACGGTGGCGATGCTGCTGGCCGGCGGCGTGACGACGATGGAGTA
CGCCACGCTCATCTTTGCCTTGCCGGTAACCATCATTGCCTACACGGTCATGGCGTCGTTCTACAAGGTG
CTGAGGATGGAGCGGGCCGAGCGCGAGGGGCAGGTGCTGCGCAGGCCGTCCATGGCGCCGATGGGCGGCC
ATCTGCCGGAGCGCTCATGGAAGCAGCGCCTCGAACAGCTGCACGCGTTCGCGTCGCTGCGGCAGGCTAC
CCAGTTCCTCGACCGTACCGTGCGCCCGGCGCTCGGCGACGTTGCCGCCGAGTTCCGCAACCAGGGCTAC
GAGGTCGCGAGCGAATCCCTGGCCAGCGAGCGCGGCATCGAGGAACCGCTGCTGCGCGTGTCGATGGACG
GTTTTCGCGCCTTCCAGTACCACGTCGCCGTCGTCGAGGCGCCGGTGCCGATGTTCAGCGGCCGCATGTC
GCGCGAGACCGACGTCTATTACCGGCTCGAGGTGTTCACCCAGACCGGTTCGGGCGGCTATGACCTGATG
GGCCTGACCCGGCAGCAGGTGATCGACGACGTGCTCGAGCGCTTCGAGGCTCACCTCGCATTCCTCACCT
TTTCCACCAATACCGATACGGCATCGGTGCTGACGCCGCCGGCGCCGGCCAGGAACCCGTAG
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    Publications
Publications on this gene:
1.  Mol Microbiol 2004 May ; 4(52):1201-14.
Regulation of type III secretion in Bordetella.

Mattoo S ,Yuk MH ,Huang LL ,Miller JF ,

Department of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine at UCLA, 10833 Le Conte Ave., Los Angeles, CA 90095-1747, USA.

The BvgAS virulence control system regulates the expression of type III secretion genes in Bordetella subspecies that infect humans and other mammals. We have identified five open reading frames, btrS, btrU, btrX, btrW and btrV, that are activated by BvgAS and encode regulatory factors that control type III secretion at the levels of transcription, protein expression and secretion. The btrS gene product bears sequence similarity to ECF (extracytoplasmic function) sigma factors and is required for transcription of the bsc locus. btrU, btrW and btrV encode proteins predicted to contain PP2C-like Ser phosphatase, HPK (His protein kinase)-like Ser kinase and STAS anti-sigma factor antagonist domains, respectively, which are characteristic of Gram-positive partner switching proteins in Bacillus subtilis. BtrU and BtrW are required for secretion of proteins that are exported by the bsc type III secretion system, whereas BtrV is specifically required for protein synthesis and/or stability. Bordetella species have thus evolved a unique cascade to differentially regulate type III secretion that combines a canonical phosphorelay system with an ECF sigma factor and a set of proteins with domain signatures that define partner switchers, which were traditionally thought to function only in Gram-positive bacteria. The presence of multiple layers and mechanisms of regulation most likely reflects the need to integrate multiple signals in controlling type III secretion. The bsc and btr loci are nearly identical between broad-host-range and human-specific Bordetella. Comparative analysis of Bordetella subspecies revealed that, whereas bsc and btr loci were transcribed in all subspecies, only broad-host-range strains expressed a functional type III secretion system in vitro. The block in type III secretion is post-transcriptional in human-adapted strains, and signal recognition appears to be a point of divergence between subspecies.

Publication Type: Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.;

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    External Links

   TIGR CMRTHE SEEDThe SEED  
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    NBCI Gene Page
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