Transporter Protein
BB3850


    Transport Function
Transporter Name: BB3850
Transporter Type: Secondary Transporter
Transporter Family: BCCT (TC#: 2.A.15)
The Betaine/Carnitine/Choline Transporter (BCCT) Family
Transporter Subfamily: 
Substrate/Function: choline
TC#: 
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    Genome Locus
PID:   33602825     Blast
Source:   Bordetella bronchiseptica RB50 NCTC-13252
Chromosome:   -
Location:   4079275..4081233
Gene:   betT
Length:  652
Strand:  -
Code:   -
COG:   -
Product:  high-affinity choline transport protein
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    Transmembrane Segment
TMSs: 
TMHMM Server 
Total:     12
TMS 1:  13-35
TMS 2:  50-69
TMS 3:  90-112
TMS 4:  146-168
TMS 5:  189-211
TMS 6:  226-248
TMS 7:  261-283
TMS 8:  310-332
TMS 9:  345-364
TMS 10:  399-421
TMS 11:  445-467
TMS 12:  471-490
Topology:   >BB3850
MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAWILGNASWFYILTVAIILLAVIFVAV
SRYGNIKLGPDHSEPDYRDITWFAMLFSTGMGIGLMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFF
HWGLHAWAIYASVALVLAFFCFRHGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGV
AQINSGLNHLFGVPVGIPTQIILIVISCGLATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFL
LQTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWGWWIAWSPFVGLFIARISRGRTIRQFVGGVL
LVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHLPWGSVTSVVAIVMVVVFFVTS
ADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIALLLADGLQALQTATIASALPFSIILLLALWGLF
KALRLDATKRSLLHRTITRTQPVRGQNWEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEA
QVVDGEEGEVRLEVSHGVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTR
DEVIGDILDQYERHRHYLHVVH
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    Sequence
Protein Sequence: >BB3850 33602825 high-affinity choline transport protein [Bordetella bronchiseptica RB50 NCTC-13252]
MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAWILGNASWFYILTVAIILLAVIFVAV
SRYGNIKLGPDHSEPDYRDITWFAMLFSTGMGIGLMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFF
HWGLHAWAIYASVALVLAFFCFRHGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGV
AQINSGLNHLFGVPVGIPTQIILIVISCGLATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFL
LQTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWGWWIAWSPFVGLFIARISRGRTIRQFVGGVL
LVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHLPWGSVTSVVAIVMVVVFFVTS
ADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIALLLADGLQALQTATIASALPFSIILLLALWGLF
KALRLDATKRSLLHRTITRTQPVRGQNWEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEA
QVVDGEEGEVRLEVSHGVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTR
DEVIGDILDQYERHRHYLHVVH
DNA Sequence: >BB3850 33602825 high-affinity choline transport protein [Bordetella bronchiseptica RB50 NCTC-13252]
ATGCAAAACGAACTCAAGCCGACCATCAACAAGCCGGTGTTCCTGACCTCGGCGCTGTTCATCCTGCTGC
TGGTCGTCTTCACGATCGCCGCTCCGGCCACCGCCCAGGACTTCTTCAACGTGATCCAGGCCTGGATCCT
GGGCAACGCCAGCTGGTTCTACATCCTGACCGTGGCCATCATCCTGCTGGCGGTCATCTTCGTGGCGGTC
AGCCGCTACGGCAATATCAAGCTGGGGCCGGACCACAGCGAGCCCGACTACCGCGATATCACCTGGTTCG
CCATGCTGTTCTCGACCGGCATGGGGATCGGCCTGATGTTCTTCGGCGTGGCCGAGCCGGTCATGCACTT
CATCGATCCTCCGGTGGGCGAGGGCGGCACCGCGCTGGCGGCGCGCGAGGCCATGAAGATCACTTTCTTC
CACTGGGGCCTGCACGCCTGGGCCATCTATGCCAGCGTGGCGCTGGTCCTGGCCTTCTTCTGTTTTCGCC
ATGGCCTGCCGCTGACCCTGCGCTCGGCCCTCTATCCCCTGATCGGCGAGCGCATCTACGGCCCGATCGG
CCATGCCGTCGACATCTTCGCCATCATCGGCACGGTGTTCGGCGTGGCGACGTCGCTGGGCCTGGGGGTG
GCGCAGATCAACAGCGGCCTGAACCACCTGTTCGGCGTGCCGGTCGGCATACCGACGCAGATCATTCTCA
TCGTCATCAGCTGTGGGCTGGCCACGATTTCGGTGGCCAGCGGGCTGGACCGGGGCATCCGCATCCTGTC
GGAGACCAATCTGCTGCTGGCGGTGGTGCTGCTGCTGTTCGTGCTGGTGCTGGGGCCCACGGTGTTCCTG
CTGCAGACCTTCGTGCAGAATACCGGCGCGTACCTCTCGGATATCGTCAACAAGACCTTCAACCTCTATG
CCTATGAGCCGACCGACTGGATCGGCGGCTGGACCTTGTTCTACTGGGGCTGGTGGATTGCGTGGTCGCC
CTTCGTGGGCCTGTTCATCGCGCGGATCTCGCGCGGGCGCACCATCCGCCAGTTCGTGGGCGGGGTATTG
CTGGTTCCCGCCGGTTTCACCCTGTTCTGGATGACGGTGTTCGGCGATGCCGCCATCCACGCCATCCTGG
TCGAAGGCATGGGCAGCCTCGCCGAGACCGTCAAGGCCGACAGTTCGCTGGCCTTGTTCGCCTTCCTGGA
GCACCTGCCCTGGGGAAGCGTGACGTCCGTCGTGGCGATCGTGATGGTGGTGGTGTTCTTCGTGACCTCG
GCCGATTCGGGCGCGCTGGTGGTGGACCAGCTGGCCTCAGGCGGCGCCGAGAGCACGCCGGTCTGGCAGC
GCATCTTCTGGTCCACCCTGATGGGCGTGGTCGCCATCGCGCTGCTGCTGGCCGACGGCCTGCAGGCGCT
GCAGACGGCCACCATCGCCAGCGCGCTGCCGTTTTCGATCATTCTGCTGCTGGCCTTGTGGGGGTTGTTC
AAGGCGCTCAGGCTGGACGCCACCAAGCGCAGCCTGCTTCATCGCACCATCACGCGCACCCAGCCGGTGC
GCGGCCAGAACTGGGAGCACCGCCTGCGCAACATCGTGATGATGCCGCGCCGCGCGCATGTGCTGCGCTT
CATTTCGGACGTGGTGCGTCCCGCCATGGACGACGTGGCCGAAGCCTTGCGCAAGGAGGCCTACGAGGCC
CAGGTGGTCGATGGCGAGGAGGGCGAGGTCAGGCTGGAGGTGTCGCATGGCGTCTACCTGGACTTCTCCT
ATGCCGTCTACCCGCGCTCCGAGGTGCGCCCCAGCCTGACGCCCCAGGAGGCCAACGACGAGGAGGAGCG
CCGCTACTTCCGCGCCGAAGTGCACTTGCGCGAGGGGGGGCAGGACTACGACATCATGGGTTGGACGCGT
GACGAGGTGATCGGCGACATCCTCGACCAGTACGAGCGCCACCGCCACTATCTGCACGTGGTGCATTGA
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    Publications
Publications on this gene:
1.  Mol Microbiol 2004 May ; 4(52):1201-14.
Regulation of type III secretion in Bordetella.

Mattoo S ,Yuk MH ,Huang LL ,Miller JF ,

Department of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine at UCLA, 10833 Le Conte Ave., Los Angeles, CA 90095-1747, USA.

The BvgAS virulence control system regulates the expression of type III secretion genes in Bordetella subspecies that infect humans and other mammals. We have identified five open reading frames, btrS, btrU, btrX, btrW and btrV, that are activated by BvgAS and encode regulatory factors that control type III secretion at the levels of transcription, protein expression and secretion. The btrS gene product bears sequence similarity to ECF (extracytoplasmic function) sigma factors and is required for transcription of the bsc locus. btrU, btrW and btrV encode proteins predicted to contain PP2C-like Ser phosphatase, HPK (His protein kinase)-like Ser kinase and STAS anti-sigma factor antagonist domains, respectively, which are characteristic of Gram-positive partner switching proteins in Bacillus subtilis. BtrU and BtrW are required for secretion of proteins that are exported by the bsc type III secretion system, whereas BtrV is specifically required for protein synthesis and/or stability. Bordetella species have thus evolved a unique cascade to differentially regulate type III secretion that combines a canonical phosphorelay system with an ECF sigma factor and a set of proteins with domain signatures that define partner switchers, which were traditionally thought to function only in Gram-positive bacteria. The presence of multiple layers and mechanisms of regulation most likely reflects the need to integrate multiple signals in controlling type III secretion. The bsc and btr loci are nearly identical between broad-host-range and human-specific Bordetella. Comparative analysis of Bordetella subspecies revealed that, whereas bsc and btr loci were transcribed in all subspecies, only broad-host-range strains expressed a functional type III secretion system in vitro. The block in type III secretion is post-transcriptional in human-adapted strains, and signal recognition appears to be a point of divergence between subspecies.

Publication Type: Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.;

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    External Links

   TIGR CMRTHE SEEDThe SEED  
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    NBCI Gene Page
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