Transporter Protein
BB0436


    Transport Function
Transporter Name: BB0436
Transporter Type: Secondary Transporter
Transporter Family: RND (TC#: 2.A.6)
The Resistance-Nodulation-Cell Division (RND) Superfamily
Transporter Subfamily: 
Substrate/Function: multidrug efflux
TC#: 
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    Genome Locus
PID:   33599425     Blast
Source:   Bordetella bronchiseptica RB50 NCTC-13252
Chromosome:   -
Location:   452084..455269
Gene:   -
Length:  1061
Strand:  -
Code:   -
COG:   -
Product:  putative multidrug-efflux system protein
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    Transmembrane Segment
TMSs: 
TMHMM Server 
Total:     12
TMS 1:  12-34
TMS 2:  343-362
TMS 3:  369-391
TMS 4:  396-418
TMS 5:  439-461
TMS 6:  476-498
TMS 7:  552-574
TMS 8:  881-900
TMS 9:  907-929
TMS 10:  934-956
TMS 11:  977-999
TMS 12:  1014-1036
Topology:   >BB0436
MNISRFFIDRPIFAGVLSVVVLLAGLLAMFQLPIAEYPEVVPPSVVVRAQYPGANPKVIAETVASPLEEA
INGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDQAQQLVQNRVSQALPRLPPDVQRLGVTTIKSSPTLTL
VVHLISPNDRYDITYLRNYAIINVKDRLARLNGVGEVAVWGSGNYAMRVWLDPQKVAQRGMTASEVIAAI
REQNVQVAAGVIGASPTQGDVPLQLNVNTRGRLQTEQEFRDIILKTSPDGGVTYLADVARVELDAQEYGL
RSLLDNRQAIGMGIMQAPGANALDVADQVRATMQELAQDFPPGVEYRIEYDPTQFVRASIKAVVHTLLEA
IALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVE
RNISAGLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLSGQFYKQFAMTIAISTVISAFNSLTL
SPALSALLLKGHHDKPDWLTRGMNRWLGGFFSGFNRVFGRASESYATGVSGVIRRKASAMGVYALLLALT
VGVSYLVPGGFVPAQDKQYLIGFTQLPNGASLDRTDAVIRRMSDIALAEPGVQSAIAFPGLSINGFTNSS
SAGIVFVTLKPFDERKPAALSGDAIAASLNQKFGAIKDAYIAVFPPPPVMGLGTLGGFKLQLEDRAALGY
AELDKAAQAFLAKAAQTPELGPSFSSYQINVPQLDVDLDRVKAKQLGVPVTDVFDTMQIYLGSVYVNDFN
RFGRVFQVRAQADAPFRAHPDDILQLKTRNEAGDMVPLSSLVQVRQSFGPEMVVRYNGYTAADINGGPAP
GYSSDQAQAAAERVAAETLPRGVKFEWTDLTYQQILAGNAGLWVFPISVLLVFLVLAALYESLTLPLAVI
LIVPMSILAALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARELELQGMAPREAAIEASRLRLR
PILMTSIAFIMGVVPLVLSSGAGAEMRQAMGVAVFFGMLGVTLFGLFLTPVFYVLLRALGARRLHAAAPH
PAPVTAPHPEH
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    Sequence
Protein Sequence: >BB0436 33599425 putative multidrug-efflux system protein [Bordetella bronchiseptica RB50 NCTC-13252]
MNISRFFIDRPIFAGVLSVVVLLAGLLAMFQLPIAEYPEVVPPSVVVRAQYPGANPKVIAETVASPLEEA
INGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDQAQQLVQNRVSQALPRLPPDVQRLGVTTIKSSPTLTL
VVHLISPNDRYDITYLRNYAIINVKDRLARLNGVGEVAVWGSGNYAMRVWLDPQKVAQRGMTASEVIAAI
REQNVQVAAGVIGASPTQGDVPLQLNVNTRGRLQTEQEFRDIILKTSPDGGVTYLADVARVELDAQEYGL
RSLLDNRQAIGMGIMQAPGANALDVADQVRATMQELAQDFPPGVEYRIEYDPTQFVRASIKAVVHTLLEA
IALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVE
RNISAGLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLSGQFYKQFAMTIAISTVISAFNSLTL
SPALSALLLKGHHDKPDWLTRGMNRWLGGFFSGFNRVFGRASESYATGVSGVIRRKASAMGVYALLLALT
VGVSYLVPGGFVPAQDKQYLIGFTQLPNGASLDRTDAVIRRMSDIALAEPGVQSAIAFPGLSINGFTNSS
SAGIVFVTLKPFDERKPAALSGDAIAASLNQKFGAIKDAYIAVFPPPPVMGLGTLGGFKLQLEDRAALGY
AELDKAAQAFLAKAAQTPELGPSFSSYQINVPQLDVDLDRVKAKQLGVPVTDVFDTMQIYLGSVYVNDFN
RFGRVFQVRAQADAPFRAHPDDILQLKTRNEAGDMVPLSSLVQVRQSFGPEMVVRYNGYTAADINGGPAP
GYSSDQAQAAAERVAAETLPRGVKFEWTDLTYQQILAGNAGLWVFPISVLLVFLVLAALYESLTLPLAVI
LIVPMSILAALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARELELQGMAPREAAIEASRLRLR
PILMTSIAFIMGVVPLVLSSGAGAEMRQAMGVAVFFGMLGVTLFGLFLTPVFYVLLRALGARRLHAAAPH
PAPVTAPHPEH
DNA Sequence: >BB0436 33599425 putative multidrug-efflux system protein [Bordetella bronchiseptica RB50 NCTC-13252]
ATGAATATCTCCCGATTCTTCATCGATCGCCCGATTTTCGCAGGCGTGCTGTCGGTGGTGGTGTTGCTGG
CCGGCCTGCTGGCCATGTTCCAGCTGCCCATCGCCGAGTATCCGGAAGTGGTGCCGCCATCGGTGGTGGT
GCGCGCCCAGTATCCGGGCGCCAACCCCAAGGTCATCGCCGAAACCGTGGCCTCGCCGCTGGAAGAAGCC
ATCAATGGCGTCGAGGACATGCTGTACATGCAGTCGCAGGCCAACAGCGACGGCAACCTGACGCTGACGG
TCAACTTCAAGCTGGGGGTGGACCCCGACCAGGCGCAGCAGCTGGTGCAGAACCGCGTGTCGCAGGCGCT
GCCGCGCCTGCCGCCGGACGTGCAGCGCCTGGGGGTGACCACCATCAAGAGTTCGCCCACGCTCACGCTG
GTGGTGCACCTGATCTCGCCCAACGACCGCTACGACATCACGTATCTGCGCAACTACGCCATCATCAACG
TCAAGGACCGGCTGGCGCGCCTCAATGGCGTGGGCGAGGTCGCGGTGTGGGGCTCGGGCAATTACGCCAT
GCGCGTATGGCTGGACCCGCAGAAAGTCGCCCAGCGCGGCATGACCGCCAGCGAGGTGATCGCCGCGATC
CGCGAGCAGAACGTGCAGGTGGCCGCCGGCGTCATCGGCGCCTCGCCCACGCAGGGCGACGTGCCCCTGC
AGCTCAACGTCAACACGCGCGGCCGCCTGCAGACCGAGCAGGAATTCCGCGACATCATCCTCAAGACCTC
GCCCGACGGCGGCGTCACCTACCTGGCCGACGTGGCGCGCGTCGAACTGGACGCGCAGGAGTACGGGCTG
CGTTCGCTGCTGGACAACCGCCAGGCGATCGGCATGGGCATCATGCAGGCGCCCGGCGCCAACGCCCTGG
ACGTGGCCGACCAGGTGCGCGCCACCATGCAGGAGCTGGCGCAGGACTTTCCGCCCGGCGTGGAGTACCG
CATCGAGTACGATCCGACCCAGTTCGTGCGCGCCAGCATCAAGGCGGTGGTGCACACCCTGCTCGAGGCC
ATCGCCCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGCCTCCATCATCCCGCTGCTGG
CGGTGCCCGTCTCGATCGTGGGCACCTTCGCGCTGCTGCTGATGTTCGGCTACTCGATCAACGCCCTGTC
GCTGTTCGGCATGGTCTTGGCCATCGGCATCGTGGTGGACGACGCCATCGTGGTGGTCGAGAACGTGGAG
CGCAACATCAGCGCCGGGCTGACCCCGCGCGAGGCCACCTACCGCGCCATGCGCGAGGTGAGCGGCCCCA
TCATCGCCATCGCCCTGACGCTGTGCGCGGTGTTCGTGCCGCTGGCCTTCATGACCGGGCTGAGCGGACA
GTTCTACAAGCAGTTCGCCATGACCATCGCCATCTCGACGGTGATCTCGGCCTTCAACTCGCTGACGCTG
TCGCCGGCGCTGTCGGCCCTGCTGCTCAAGGGCCACCACGACAAGCCCGACTGGCTGACGCGCGGCATGA
ACCGCTGGCTGGGCGGCTTCTTCAGCGGGTTCAACCGCGTGTTCGGGCGCGCCTCCGAGTCGTACGCGAC
GGGCGTCAGCGGCGTGATACGCCGCAAGGCGTCGGCCATGGGCGTGTATGCCCTGCTGCTGGCGCTGACC
GTGGGCGTGTCGTACCTCGTGCCCGGCGGCTTCGTGCCGGCGCAGGACAAGCAGTACCTGATCGGCTTCA
CGCAGCTGCCCAACGGCGCCTCGCTGGACCGCACCGACGCGGTGATCCGCCGCATGTCGGACATCGCGCT
GGCCGAGCCGGGGGTGCAAAGCGCCATCGCATTTCCGGGCCTGTCGATCAACGGGTTCACCAACAGCTCC
AGCGCGGGCATCGTGTTCGTCACGCTCAAGCCCTTCGACGAACGCAAGCCGGCGGCGCTCTCGGGCGATG
CCATCGCCGCCAGCCTGAACCAGAAATTCGGCGCCATCAAGGATGCGTATATCGCGGTGTTCCCGCCGCC
GCCGGTCATGGGGCTGGGCACGCTGGGCGGCTTCAAGCTGCAGCTGGAGGACCGCGCCGCGCTGGGCTAC
GCCGAGCTGGACAAGGCGGCCCAGGCGTTCCTGGCCAAGGCGGCGCAGACGCCCGAGCTGGGACCTTCGT
TCTCGAGCTACCAGATCAACGTGCCGCAGCTGGACGTGGACCTGGACCGGGTCAAGGCCAAGCAGCTGGG
CGTGCCGGTGACCGACGTGTTCGACACCATGCAGATCTACCTGGGCTCGGTCTACGTCAACGACTTCAAC
CGCTTCGGCCGGGTGTTCCAGGTGCGCGCGCAGGCCGACGCGCCGTTTCGCGCCCACCCGGACGACATCC
TGCAGCTGAAGACGCGCAACGAAGCCGGCGACATGGTGCCGCTGTCCTCGCTGGTGCAGGTGCGCCAGTC
GTTCGGGCCCGAGATGGTGGTGCGCTACAACGGCTACACGGCCGCCGACATCAACGGCGGCCCGGCCCCC
GGCTACTCGTCCGACCAGGCGCAGGCCGCGGCCGAGCGCGTGGCGGCCGAAACCCTGCCGCGCGGCGTGA
AGTTCGAATGGACCGACCTGACCTACCAGCAGATCCTGGCGGGCAACGCCGGCCTGTGGGTGTTTCCTAT
CAGCGTGCTGCTGGTGTTCCTGGTGCTGGCCGCGCTGTACGAAAGCCTGACCCTGCCGCTGGCGGTGATC
CTGATCGTGCCCATGAGCATCCTGGCCGCGTTGACCGGCGTGTGGCTGACCGGCGGCGACAACAACATCT
TCACGCAGATCGGCCTGATGGTGCTGGTCGGCCTGTCGGCCAAGAACGCCATCCTGATCGTGGAGTTCGC
CCGCGAGCTGGAGCTGCAGGGCATGGCGCCGCGCGAGGCGGCCATCGAAGCCAGCCGGCTGCGCCTGCGG
CCCATCCTGATGACGTCGATCGCCTTCATCATGGGCGTGGTGCCGCTGGTGCTGTCCTCGGGCGCCGGCG
CCGAAATGCGCCAGGCCATGGGCGTGGCGGTGTTCTTCGGCATGCTGGGCGTCACCCTGTTCGGCCTGTT
CCTCACCCCGGTCTTCTACGTGCTGCTGCGCGCGCTGGGCGCGCGCCGGCTGCACGCCGCCGCCCCGCAC
CCGGCGCCGGTGACAGCGCCGCACCCCGAACATTGA
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    Publications
Publications on this gene:
1.  Mol Microbiol 2004 May ; 4(52):1201-14.
Regulation of type III secretion in Bordetella.

Mattoo S ,Yuk MH ,Huang LL ,Miller JF ,

Department of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine at UCLA, 10833 Le Conte Ave., Los Angeles, CA 90095-1747, USA.

The BvgAS virulence control system regulates the expression of type III secretion genes in Bordetella subspecies that infect humans and other mammals. We have identified five open reading frames, btrS, btrU, btrX, btrW and btrV, that are activated by BvgAS and encode regulatory factors that control type III secretion at the levels of transcription, protein expression and secretion. The btrS gene product bears sequence similarity to ECF (extracytoplasmic function) sigma factors and is required for transcription of the bsc locus. btrU, btrW and btrV encode proteins predicted to contain PP2C-like Ser phosphatase, HPK (His protein kinase)-like Ser kinase and STAS anti-sigma factor antagonist domains, respectively, which are characteristic of Gram-positive partner switching proteins in Bacillus subtilis. BtrU and BtrW are required for secretion of proteins that are exported by the bsc type III secretion system, whereas BtrV is specifically required for protein synthesis and/or stability. Bordetella species have thus evolved a unique cascade to differentially regulate type III secretion that combines a canonical phosphorelay system with an ECF sigma factor and a set of proteins with domain signatures that define partner switchers, which were traditionally thought to function only in Gram-positive bacteria. The presence of multiple layers and mechanisms of regulation most likely reflects the need to integrate multiple signals in controlling type III secretion. The bsc and btr loci are nearly identical between broad-host-range and human-specific Bordetella. Comparative analysis of Bordetella subspecies revealed that, whereas bsc and btr loci were transcribed in all subspecies, only broad-host-range strains expressed a functional type III secretion system in vitro. The block in type III secretion is post-transcriptional in human-adapted strains, and signal recognition appears to be a point of divergence between subspecies.

Publication Type: Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.;

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    External Links

   TIGR CMRTHE SEEDThe SEED  
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    NBCI Gene Page
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